PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472210
Common NameARALYDRAFT_472210
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 904aa    MW: 99570.2 Da    PI: 6.0537
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472210genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772e-24159260199
             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
             f+k+lt sd++++g +++p++ ae+         +++++  +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   ++++ +l+v+v
  472210 159 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQLMVGV 257
             99*********************999****996444444..8************************************************..4577778**** PP

             E-S CS
      B3  97 frk 99 
             +r+
  472210 258 RRA 260
             *97 PP

2Auxin_resp111.67.9e-37285368183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha++++++F ++YnPra+++eFv++++k++ka+  +++svGmRf m+feteds +rr++Gt+vg+sdldp+rWp+SkWr+L+
      472210 285 AAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 368
                 79********************************9989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-45152288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-42152273IPR015300DNA-binding pseudobarrel domain
CDDcd100176.76E-23158259No hitNo description
SMARTSM010191.1E-25159261IPR003340B3 DNA binding domain
PfamPF023624.6E-22159260IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155159261IPR003340B3 DNA binding domain
PfamPF065078.9E-32285368IPR010525Auxin response factor
PfamPF023093.0E-9789880IPR033389AUX/IAA domain
PROSITE profilePS5174522.172794878IPR000270PB1 domain
SuperFamilySSF542777.95E-7808873No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 904 aa     Download sequence    Send to blast
MASLSCVEDK MKTSCLVNGG GTITTTTTSQ STLLEEMKLL KDQSGTRKPV INSELWHACA  60
GPLVCLPQVG SLVYYFSQGH SEQVAVSTRR SATTQVPNYP NLPSQLMCQV HNVTLHADKD  120
SDEIYAQMSL QPVHSERDVF PVPDFGMLRG GSKHPTEFFC KTLTASDTST HGGFSVPRRA  180
AEKLFPPLDY TAQPPTQELV VRDLHENTWT FRHIYRGQPK RHLLTTGWSL FVGSKRLRAG  240
DSVLFIRDEK SQLMVGVRRA NRQQTALPSS VLSADSMHIG VLAAAAHATA NRTPFLIFYN  300
PRACPAEFVI PLAKYRKAIC GSQLSVGMRF GMMFETEDSG KRRYMGTIVG ISDLDPLRWP  360
GSKWRNLQVE WDEPGCNDKP TRVSPWDIET PESLFIFPSL TSGLKRQLHP SYFAGETEWG  420
SLIKRPLIRV PDSANGIMPY ASFPNMASEQ LMKMMMRPHN NQNVPSFMSE MQQNVVMGHG  480
GLLGDMKMQQ PMMMSRKSEM LQPQNKLTVN PSASNSSGQE QNLSQSMSAP AKPDNSTLSG  540
CSSGRVEHGL EQSMEQASQA TTSTVCNEEK VNQLLQKPGA SSPVQADPCL DISQQIYPPQ  600
SDPINGFSFL ETDELTSQVS SFQSLAGSYK QPFMLSSQDS SAVGLPDSTN SPVFHDVWDN  660
QLNGLKFDQF SPLMQQDLYA SQNICMSNST TSNILDPPLS NTVLDDFCAI KETDFQNHPS  720
SCLVGNNNTS FAQDVQSQIT SASFADSQAF SRQDFPDNSG GTGTSSSNVD FDDSSLLQNS  780
KGSSWKKIAT PRVRTYTKVQ KTGSVGRSID VTSFKDYKEL KSAIECMFGL EGLLTQPQSS  840
GWKLVYVDYE SDVLLVGDDP WEEFVGCVRC IRILSPTEVQ QMSEEGMKLL NSAGINDLKT  900
SVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013932392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3347160.0AF334716.1 Arabidopsis thaliana clone C00027 (h) auxin response factor 5 (At1g19850) mRNA, complete cds.
GenBankBT0020500.0BT002050.1 Arabidopsis thaliana transcription factor (At1g19850) mRNA, complete cds.
GenBankBT0088050.0BT008805.1 Arabidopsis thaliana At1g19850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890356.10.0hypothetical protein ARALYDRAFT_472210
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLD7KI680.0D7KI68_ARALL; Auxin response factor
STRINGfgenesh2_kg.1__2164__AT1G19850.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58082746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein